Last updated on 2024-07-22 15:57:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 14.89 | 188.14 | 203.03 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 10.19 | 144.18 | 154.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 276.51 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 248.08 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.1 | 14.00 | 279.00 | 293.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.1 | 9.67 | 260.46 | 270.13 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 9.05 | 184.77 | 193.82 | ERROR | |
| r-release-macos-arm64 | 1.0.1 | 124.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0.1 | 189.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0.1 | 14.00 | 279.00 | 293.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.1 | 132.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 418.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 17.00 | 299.00 | 316.00 | NOTE |
Version: 1.0.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: replacing previous import ‘seewave::wav2flac’ by ‘warbleR::wav2flac’ when loading ‘ohun’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64
Version: 1.0.1
Check: dependencies in R code
Result: WARN
Missing or unexported objects:
‘warbleR::duration_wavs’ ‘warbleR::try_na’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘ohun-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: consensus_detection
> ### Title: Remove ambiguous detections
> ### Aliases: consensus_detection
>
> ### ** Examples
>
> {
+ # load example data
+ data("lbh1", "lbh_reference")
+
+ # save sound files
+ tuneR::writeWave(lbh1, file.path(tempdir(), "lbh2.wav"))
+
+ # template for the first sound file in 'lbh_reference'
+ templ1 <- lbh_reference[1, ]
+
+ # generate template correlations
+ tc <- template_correlator(
+ templates = templ1, path = tempdir(),
+ files = "lbh2.wav"
+ )
+
+ # template detection
+ td <- template_detector(template.correlations = tc, threshold = 0.12)
+
+ # this detection generates 2 split positives
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # label detection
+ ltd <- label_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # now they can be filter to keep the detection with the highest score for each split
+ ftd <- consensus_detection(ltd, by = "scores")
+
+ # splits must be 0
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = ftd
+ )
+ }
all selections are OK
Error: 'try_na' is not an exported object from 'namespace:warbleR'
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘energy_based_detection.Rmd’ using rmarkdown
Quitting from lines 249-280 [unnamed-chunk-13] (energy_based_detection.Rmd)
Error: processing vignette 'energy_based_detection.Rmd' failed with diagnostics:
could not find function "sim_songs"
--- failed re-building ‘energy_based_detection.Rmd’
--- re-building ‘intro_to_ohun.Rmd’ using rmarkdown
--- finished re-building ‘intro_to_ohun.Rmd’
--- re-building ‘template_based_detection.Rmd’ using rmarkdown
Quitting from lines 150-155 [unnamed-chunk-9] (template_based_detection.Rmd)
Error: processing vignette 'template_based_detection.Rmd' failed with diagnostics:
'try_na' is not an exported object from 'namespace:warbleR'
--- failed re-building ‘template_based_detection.Rmd’
SUMMARY: processing the following files failed:
‘energy_based_detection.Rmd’ ‘template_based_detection.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 1.0.1
Check: installed package size
Result: NOTE
installed size is 6.8Mb
sub-directories of 1Mb or more:
doc 6.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘ohun-Ex.R’ failed
The error most likely occurred in:
> ### Name: consensus_detection
> ### Title: Remove ambiguous detections
> ### Aliases: consensus_detection
>
> ### ** Examples
>
> {
+ # load example data
+ data("lbh1", "lbh_reference")
+
+ # save sound files
+ tuneR::writeWave(lbh1, file.path(tempdir(), "lbh2.wav"))
+
+ # template for the first sound file in 'lbh_reference'
+ templ1 <- lbh_reference[1, ]
+
+ # generate template correlations
+ tc <- template_correlator(
+ templates = templ1, path = tempdir(),
+ files = "lbh2.wav"
+ )
+
+ # template detection
+ td <- template_detector(template.correlations = tc, threshold = 0.12)
+
+ # this detection generates 2 split positives
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # label detection
+ ltd <- label_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = td
+ )
+
+ # now they can be filter to keep the detection with the highest score for each split
+ ftd <- consensus_detection(ltd, by = "scores")
+
+ # splits must be 0
+ diagnose_detection(
+ reference = lbh_reference[lbh_reference == "lbh2.wav", ],
+ detection = ftd
+ )
+ }
all selections are OK
Error: 'try_na' is not an exported object from 'namespace:warbleR'
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘energy_based_detection.Rmd’ using rmarkdown
Quitting from lines 249-280 [unnamed-chunk-13] (energy_based_detection.Rmd)
Error: processing vignette 'energy_based_detection.Rmd' failed with diagnostics:
could not find function "sim_songs"
--- failed re-building ‘energy_based_detection.Rmd’
--- re-building ‘intro_to_ohun.Rmd’ using rmarkdown
--- finished re-building ‘intro_to_ohun.Rmd’
--- re-building ‘template_based_detection.Rmd’ using rmarkdown
Quitting from lines 150-155 [unnamed-chunk-9] (template_based_detection.Rmd)
Error: processing vignette 'template_based_detection.Rmd' failed with diagnostics:
'try_na' is not an exported object from 'namespace:warbleR'
--- failed re-building ‘template_based_detection.Rmd’
SUMMARY: processing the following files failed:
‘energy_based_detection.Rmd’ ‘template_based_detection.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc