Calculates metabolic rate of fish and other aquatic organisms measured using an intermittent-flow respirometry approach. The tool is used to run a set of graphical QC tests of raw respirometry data, correct it for background respiration and chamber effect, filter and extract target values of absolute and mass-specific metabolic rate. Experimental design should include background respiration tests and measuring of one or more metabolic rate traits. The R package is ideally integrated with the pump controller 'PumpResp' and the DO meter 'SensResp' (open-source hardware by FishResp). Raw respirometry data can be also imported from 'AquaResp' (free software), 'AutoResp' ('LoligoSystems'), 'OxyView' ('PreSens'), 'Pyro Oxygen Logger' ('PyroScience') and 'Q-box Aqua' ('QubitSystems'). More information about the R package 'FishResp'is available in the publication by Morozov et al. (2019) <doi:10.1093/conphys/coz003>.
| Version: | 1.1.1 |
| Depends: | R (≥ 3.0.0) |
| Imports: | chron, lattice, mclust, rMR, respirometry |
| Published: | 2022-09-18 |
| DOI: | 10.32614/CRAN.package.FishResp |
| Author: | Sergey Morozov [aut, cre], Scott McCairns [aut, ths], Juha Merila [ths], Federico Calboli [ctb], Jenni Prokkola [dtc], Stephen White [dtc], Daniel Montgomery [dtc], Laura Almodovar-Acevedo [dtc], Niclas Kolm [dtc], Alexander Kotrschal [dtc], Erik Gill [dtc] |
| Maintainer: | Sergey Morozov <sergey.morozov at helsinki.fi> |
| License: | GPL-3 |
| URL: | https://fishresp.org |
| NeedsCompilation: | no |
| SystemRequirements: | Display resolution >= 1280x800; RAM >= 4GB |
| Citation: | FishResp citation info |
| Materials: | README NEWS |
| CRAN checks: | FishResp results |
| Reference manual: | FishResp.pdf |
| Package source: | FishResp_1.1.1.tar.gz |
| Windows binaries: | r-devel: FishResp_1.1.1.zip, r-release: FishResp_1.1.1.zip, r-oldrel: FishResp_1.1.1.zip |
| macOS binaries: | r-release (arm64): FishResp_1.1.1.tgz, r-oldrel (arm64): FishResp_1.1.1.tgz, r-release (x86_64): FishResp_1.1.1.tgz, r-oldrel (x86_64): FishResp_1.1.1.tgz |
| Old sources: | FishResp archive |
| Reverse suggests: | respR |
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