If you find this tool useful for your research, please cite Smith (2022) or Aberer et al. (2013) (underlying methods) and, if possible, Smith (2021) (R interface).

Aberer AJ, Krompass D, Stamatakis A (2013). “Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice.” Systematic Biology, 62(1), 162-166. doi:10.1093/sysbio/sys078.

Smith MR (2021). Rogue: Identify Rogue Taxa in Sets of Phylogenetic Trees. doi:10.5281/zenodo.5037327.

Smith MR (2022). “Using information theory to detect rogue taxa and improve consensus trees.” Systematic Biology, 71(5), 986-1008. doi:10.1093/sysbio/syab099.

Corresponding BibTeX entries:

  @Article{Aberer2013,
    title = {Pruning rogue taxa improves phylogenetic accuracy: an
      efficient algorithm and webservice},
    author = {Andre J. Aberer and Denis Krompass and Alexandros
      Stamatakis},
    year = {2013},
    doi = {10.1093/sysbio/sys078},
    journal = {Systematic Biology},
    volume = {62},
    pages = {162-166},
    number = {1},
  }

  @Manual{Smith2021,
    title = {Rogue: Identify Rogue Taxa in Sets of Phylogenetic Trees},
    author = {Martin R. Smith},
    year = {2021},
    doi = {10.5281/zenodo.5037327},
    journal = {Zotero},
  }

  @Article{Smith2022,
    title = {Using information theory to detect rogue taxa and improve
      consensus trees},
    author = {Martin R. Smith},
    year = {2022},
    doi = {10.1093/sysbio/syab099},
    journal = {Systematic Biology},
    volume = {71},
    number = {5},
    pages = {986-1008},
  }