copyseparator: Assembling Long Gene Copies from Short Read Data

Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.

Version:	1.2.0
Depends:	R (≥ 3.5.0)
Imports:	ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings, grDevices, doParallel, foreach, parallel
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2022-11-25
DOI:	10.32614/CRAN.package.copyseparator
Author:	Lei Yang
Maintainer:	Lei Yang <leiyangslu at gmail.com>
BugReports:	https://github.com/LeiYang-Fish/copyseparator/issues
License:	GPL-2
URL:	https://github.com/LeiYang-Fish/copyseparator
NeedsCompilation:	no
Materials:	NEWS
CRAN checks:	copyseparator results

Documentation:

Reference manual:	copyseparator.pdf
Vignettes:	Usage_of_copyseparator

Downloads:

Package source:	copyseparator_1.2.0.tar.gz
Windows binaries:	r-devel: copyseparator_1.2.0.zip, r-release: copyseparator_1.2.0.zip, r-oldrel: copyseparator_1.2.0.zip
macOS binaries:	r-release (arm64): copyseparator_1.2.0.tgz, r-oldrel (arm64): copyseparator_1.2.0.tgz, r-release (x86_64): copyseparator_1.2.0.tgz, r-oldrel (x86_64): copyseparator_1.2.0.tgz
Old sources:	copyseparator archive

Linking:

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