The argument to.range of normalise()
has been renamed to to_range.
Silence some warnings with GCC 12.
Replace dots in function names with underscore (_)
to silence CRAN Note.
If the installation cannot find the Gnu Scientific Library, it gives hints on how to install it on various operating systems.
pdf_crop() can optionally embed fonts.
Fix calculation of ideal in
largest_eafdiff().
Fix configure script to use the same compiler and
flags as R.
eafplot() now returns the attainment surfaces
computed invisibly.
New functions pdf_crop(),
write_datasets(), attsurf2df().
Fix bug that made polygons extend beyond their boundaries
affecting eafdiff() and
eafdiffplot().
col argument of eafdiffplot() may be a
colormap function.Improve documentation of igd().
Fix errors with single-point attainment surfaces.
Fix bug in eafplot.list().
read_datasets() is able to read files compressed
with xz.
eafs() and eafdiff() and the plotting
functions using them now consume slightly less memory.
New function whv_hype() to estimate weighted
hypervolume using Monte-Carlo sampling.
New functions total_whv_rect() and
whv_rect() to compute weighted hypervolume with rectangular
weighted regions.
New functions largest_eafdiff(),
choose_eafdiffplot() and choose_eafdiff() for
converting EAF differences into weighted regions for calculating the
weighted hypervolume.
New function avg_hausdorff_dist() for computing the
averaged Hausdorff distance.
Compute Vorob’ev threshold, expectation and deviation. Plots of the symmetric deviation. (Mickael Binois)
Non-integer EAF percentiles are computed correctly.
Various aesthetic improvements in eafplot() and
eafdiffplot().
Functions for computing hypervolume, hypervolume contributions, epsilon metric, IGD+, filter dominated points, and fast normalisation of ranges.
Command-line tools for computing the above are installed in
system.file(package="eaf", "bin/").
Online documentation available at: http://lopez-ibanez.eu/eaftools
New read_datasets() replaces deprecated
read.data.sets(). New parameter text of
read_datasets().
New eafdiff() function for computing EAF
differences.
The data.frame method for eafplot has
been removed. It had unexpected behavior and the default method handles
data.frame already.
Python script to compute EAF differences installed at
system.file(package="eaf", "scripts/eafdiff.py").
Development version moved to GitHub: https://github.com/MLopez-Ibanez/eaf
Remove leading zeros from version number.
New parameters left.panel.last and
right.panel.last of eafdiffplot().
Export and document function eafs() to compute
EAFs.
eafdiff.pl: Handle --colors=,
--intervals=.
Fix crash in eafplot() if sets is a
vector of strings.
Reset layout in eafdiffplot().
Compute eaf for 3D.
Added testthat testing framework.
The documentation is now generated with Roxygen2.
Entry points to C code are now properly registered.
inst/scripts/eaf/Makefile.Fix bug when automatically generating a legend in
eafplot() with the formula interface (Thanks to Bernd
Bischl for reporting this)
Improve handling of various newline character formats.
Reduce memory consumption (up to four times less memory).
eafdiff.pl: Mention option
--legendpos=none to hide the legend.
eafplot.pl: Add options --maximise and
--xmaximise and --colors=. Fix bug with
--area.
eafplot.default() now requires two colors when
type=="area" and a palette is interpolated between these
two colors for all the different levels plotted (Thanks to Alexandre
Quemy for the suggestion).
Implement type = "area" for
eafdiffplot(). This is now the default.
The idea for the algorithm to compute the areas was provided by Carlos M. Fonseca. The implementation uses R polygons, which some PDF viewers may have trouble rendering correctly (See https://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-are-there-unwanted-borders).
Plots will look correct when printed. To get the previous behavior
use eafdiffplot(, type = "point").
Attempt to deal with DOS/Unix newlines correctly.
eafplot.pl: Cleanups.
(--single, --output, --legend): New options. Default to
PDF.
eafdiff.pl: Many cleanups. EAF diff with
type="area" is the default now. Parameter
--cex replaced by --scale. Do not require
ps2eps. Handle --obj1= better. Crop pdf before
converting to PNG. (--noattsurfs): New option.
(--output-dir,--output): New options. (--eps):
New option. PDF is the default now.
Force eafdiffplot() to use a square plotting
region.
read.data.sets() normalizes paths, thus it works
with files such as ~/file.
Function eafdiffplot() handles
percentiles=NA and grand.lines parameter.
Fix bug with ranges and maximise=TRUE in
eafdiffplot().
Fix points.steps to work correctly for all values of
maximise.
Fix bug in
eafdiffplot(..., maximise=c(TRUE,FALSE), full.eaf = TRUE)
Fix "log" parameter in eafplot() and
eafdiffplot().
Avoid that eafplot.formula modifies global
options.
Add 'axes' parameter to
eafplot().
To avoid confusion, the arguments 'xaxis.side' and
'yaxis.side' of eafplot() can only take values
c("below", "above") and c("left", "right"),
respectively.
Add missing Makefile in inst/scripts/eaf/.
Handle maximise argument in eafdiffplot() and
--maximise command-line option in
eafdiff.pl
R/calls.R (eafplot.data.frame): Fix
problem with main parameter.