ggrasp: Gaussian-Based Genome Representative Selector with Prioritization

Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Version:	1.2
Depends:	R (≥ 3.1.0)
Imports:	ggplot2, mixtools, ape, bgmm, colorspace, methods
Published:	2022-04-21
DOI:	10.32614/CRAN.package.ggrasp
Author:	Thomas Clarke [aut, cre]
Maintainer:	Thomas Clarke <tclarke at jcvi.org>
License:	GPL-2
NeedsCompilation:	no
Citation:	ggrasp citation info
Materials:	README NEWS
CRAN checks:	ggrasp results

Documentation:

Reference manual:

ggrasp.pdf

Downloads:

Package source:	ggrasp_1.2.tar.gz
Windows binaries:	r-devel: ggrasp_1.2.zip, r-release: ggrasp_1.2.zip, r-oldrel: ggrasp_1.2.zip
macOS binaries:	r-release (arm64): ggrasp_1.2.tgz, r-oldrel (arm64): ggrasp_1.2.tgz, r-release (x86_64): ggrasp_1.2.tgz, r-oldrel (x86_64): ggrasp_1.2.tgz
Old sources:	ggrasp archive

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