plantecowrap: Enhancing Capabilities of 'plantecophys'
Provides wrapping functions to add to capabilities to 'plantecophys' (Duursma, 2015, <doi:10.1371/journal.pone.0143346>). Key added capabilities include temperature responses of mesophyll conductance (gm, gmeso), apparent Michaelis-Menten constant for rubisco carboxylation in air (Km, Kcair),and photorespiratory CO2 compensation point (GammaStar) for fitting A-Ci or A-Cc curves for C3 plants (for temperature responses of gm, Km, & GammaStar, see Bernacchi et al., 2002, <doi:10.1104/pp.008250>; for theory on fitting A-Ci or A-Cc curves, see Farquhar et al., 1980; <doi:10.1007/BF00386231>, von Caemmerer, 2000, ISBN:064306379X; Ethier & Livingston, 2004 <doi:10.1111/j.1365-3040.2004.01140.x>; and Gu et al., 2010, <doi:10.1111/j.1365-3040.2010.02192.x>). Includes the ability to fit the Arrhenius and modified Arrhenius temperature response functions (see Medlyn et al., 2002, <doi:10.1046/j.1365-3040.2002.00891.x>) for maximum rubisco carboxylation rates (Vcmax) and maximum electron transport rates (Jmax) (see Farquhar et al., 1980; <doi:10.1007/BF00386231>).
| Version: | 1.0.4 |
| Depends: | R (≥ 3.5.0), ggplot2 (≥ 3.2.1), minpack.lm (≥ 1.2-1), plantecophys (≥ 1.4-4), tidyr (≥ 1.0.0) |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2020-04-03 |
| DOI: | 10.32614/CRAN.package.plantecowrap |
| Author: | Joseph Stinziano 
[aut, cre],
Demi Gamble [aut],
Robert Sharwood [aut],
Warren Conaty [aut] |
| Maintainer: | Joseph Stinziano <josephstinziano at gmail.com> |
| BugReports: | https://github.com/jstinzi/plantecowrap/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/jstinzi/plantecowrap |
| NeedsCompilation: | no |
| In views: | Agriculture |
| CRAN checks: | plantecowrap results [issues need fixing before 2024-10-31] |
Documentation:
| Reference manual: | plantecowrap.pdf |
| Vignettes: |
Example_dataset_creation Using_plantecophystools |
Downloads:
| Package source: | plantecowrap_1.0.4.tar.gz |
| Windows binaries: | r-devel: plantecowrap_1.0.4.zip, r-release: plantecowrap_1.0.4.zip, r-oldrel: plantecowrap_1.0.4.zip |
| macOS binaries: | r-release (arm64): plantecowrap_1.0.4.tgz, r-oldrel (arm64): plantecowrap_1.0.4.tgz, r-release (x86_64): plantecowrap_1.0.4.tgz, r-oldrel (x86_64): plantecowrap_1.0.4.tgz |
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