MOSim
Multi-Omics Simulation (MOSim)
Bioconductor version: Release (3.20)
MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.
Author: Carolina Monzó [aut], Carlos Martínez [aut], Sonia Tarazona [cre, aut]
Maintainer: Sonia Tarazona <sotacam at gmail.com>
Citation (from within R, enter
citation("MOSim")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MOSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOSim")| %\VignetteEngine{knitr::knitr}Wiki of how to use mosim | HTML | R Script |
| Wiki of how to use sc_mosim | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentalDesign, RNASeq, Software, TimeCourse |
| Version | 2.2.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 4.2.0) |
| Imports | HiddenMarkov, zoo, IRanges, S4Vectors, dplyr, ggplot2, lazyeval, matrixStats, methods, rlang, stringi, stringr, scran, Seurat, Signac, edgeR, Rcpp |
| System Requirements | |
| URL | https://github.com/ConesaLab/MOSim |
| Bug Reports | https://github.com/ConesaLab/MOSim/issues |
See More
| Suggests | testthat, knitr, rmarkdown, codetools, BiocStyle, stats, utils, purrr, scales, tibble, tidyr, Biobase, scater, SingleCellExperiment, decor, markdown, Rsamtools, igraph, leiden, bluster |
| Linking To | cpp11, Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MOSim_2.2.0.tar.gz |
| Windows Binary (x86_64) | MOSim_2.2.0.zip |
| macOS Binary (x86_64) | MOSim_2.2.0.tgz |
| macOS Binary (arm64) | MOSim_2.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MOSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOSim |
| Bioc Package Browser | https://code.bioconductor.org/browse/MOSim/ |
| Package Short Url | https://bioconductor.org/packages/MOSim/ |
| Package Downloads Report | Download Stats |