plyinteractions
Extending tidy verbs to genomic interactions
Bioconductor version: Release (3.20)
Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R, enter
citation("plyinteractions")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plyinteractions")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyinteractions")| HiCarithmetic | HTML | R Script |
| plyinteractions | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0) |
| Imports | InteractionSet, GenomeInfoDb, BiocGenerics, GenomicRanges, plyranges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils |
| System Requirements | |
| URL | https://github.com/js2264/plyinteractions |
| Bug Reports | https://github.com/js2264/plyinteractions/issues |
See More
| Suggests | tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | OHCA |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plyinteractions_1.4.0.tar.gz |
| Windows Binary (x86_64) | plyinteractions_1.4.0.zip |
| macOS Binary (x86_64) | plyinteractions_1.4.0.tgz |
| macOS Binary (arm64) | plyinteractions_1.3.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plyinteractions |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyinteractions |
| Bioc Package Browser | https://code.bioconductor.org/browse/plyinteractions/ |
| Package Short Url | https://bioconductor.org/packages/plyinteractions/ |
| Package Downloads Report | Download Stats |